vtkProteinRibbonFilter Class Reference

generates protein ribbons More...

#include <vtkProteinRibbonFilter.h>

Inherits vtkPolyDataAlgorithm.

Public Types
typedef vtkPolyDataAlgorithm	Superclass

Public Member Functions
virtual int	IsA (const char *type)
vtkProteinRibbonFilter *	NewInstance () const
void	PrintSelf (ostream &os, vtkIndent indent)
virtual float	GetCoilWidth ()
virtual void	SetCoilWidth (float)
virtual float	GetHelixWidth ()
virtual void	SetHelixWidth (float)
virtual int	GetSubdivideFactor ()
virtual void	SetSubdivideFactor (int)
virtual bool	GetDrawSmallMoleculesAsSpheres ()
virtual void	SetDrawSmallMoleculesAsSpheres (bool)
virtual int	GetSphereResolution ()
virtual void	SetSphereResolution (int)

Static Public Member Functions
static int	IsTypeOf (const char *type)
static vtkProteinRibbonFilter *	SafeDownCast (vtkObjectBase *o)
static vtkProteinRibbonFilter *	New ()

Protected Member Functions
virtual vtkObjectBase *	NewInstanceInternal () const
	vtkProteinRibbonFilter ()
	~vtkProteinRibbonFilter ()
int	FillInputPortInformation (int, vtkInformation *)
int	RequestData (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
void	CreateThinStrip (vtkPolyData *poly, vtkUnsignedCharArray *pointsColors, vtkPoints *p, std::vector< std::pair< vtkVector3f, bool > > &p1, std::vector< std::pair< vtkVector3f, bool > > &p2, std::vector< vtkColor3ub > &colors)
void	CreateAtomAsSphere (vtkPolyData *poly, vtkUnsignedCharArray *pointsColors, double *pos, const vtkColor3ub &color, float radius, float scale)
void	SetColorByAtom (std::vector< vtkColor3ub > &colors, vtkStringArray *atomTypes)
void	SetColorByStructure (std::vector< vtkColor3ub > &colors, vtkStringArray *atomTypes, vtkUnsignedCharArray *ss, const vtkColor3ub &helixColor, const vtkColor3ub &sheetColor)

Static Protected Member Functions
static std::vector< vtkVector3f > *	Subdivide (std::vector< std::pair< vtkVector3f, bool > > &p, int div)

Protected Attributes
std::map< std::string, vtkColor3ub >	ElementColors
float	CoilWidth
float	HelixWidth
int	SphereResolution
int	SubdivideFactor
bool	DrawSmallMoleculesAsSpheres

Detailed Description

generates protein ribbons

vtkProteinRibbonFilter is a polydata algorithm that generates protein ribbons.

Tests:

vtkProteinRibbonFilter (Tests)

Definition at line 38 of file vtkProteinRibbonFilter.h.

Member Typedef Documentation

typedef vtkPolyDataAlgorithm vtkProteinRibbonFilter::Superclass

Definition at line 42 of file vtkProteinRibbonFilter.h.

Constructor & Destructor Documentation

vtkProteinRibbonFilter::vtkProteinRibbonFilter ( )

protected

vtkProteinRibbonFilter::~vtkProteinRibbonFilter ( )

protected

Member Function Documentation

static int vtkProteinRibbonFilter::IsTypeOf ( const char *  type )

static

virtual int vtkProteinRibbonFilter::IsA ( const char *  type )

virtual

static vtkProteinRibbonFilter* vtkProteinRibbonFilter::SafeDownCast ( vtkObjectBase *  o )

static

virtual vtkObjectBase* vtkProteinRibbonFilter::NewInstanceInternal ( ) const

protectedvirtual

vtkProteinRibbonFilter* vtkProteinRibbonFilter::NewInstance

(

)

const

void vtkProteinRibbonFilter::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

static vtkProteinRibbonFilter* vtkProteinRibbonFilter::New ( )

static

virtual float vtkProteinRibbonFilter::GetCoilWidth ( )

virtual

Width of the ribbon coil. Default is 0.3.

virtual void vtkProteinRibbonFilter::SetCoilWidth ( float  )

virtual

Width of the ribbon coil. Default is 0.3.

virtual float vtkProteinRibbonFilter::GetHelixWidth ( )

virtual

Width of the helix part of the ribbon. Default is 1.3.

virtual void vtkProteinRibbonFilter::SetHelixWidth ( float  )

virtual

Width of the helix part of the ribbon. Default is 1.3.

virtual int vtkProteinRibbonFilter::GetSubdivideFactor ( )

virtual

Smoothing factor of the ribbon. Default is 20.

virtual void vtkProteinRibbonFilter::SetSubdivideFactor ( int  )

virtual

Smoothing factor of the ribbon. Default is 20.

virtual bool vtkProteinRibbonFilter::GetDrawSmallMoleculesAsSpheres ( )

virtual

If enabled, small molecules (HETATMs) are drawn as spheres. Default is true.

virtual void vtkProteinRibbonFilter::SetDrawSmallMoleculesAsSpheres ( bool  )

virtual

If enabled, small molecules (HETATMs) are drawn as spheres. Default is true.

virtual int vtkProteinRibbonFilter::GetSphereResolution ( )

virtual

Resolution of the spheres for small molecules. Default is 20.

virtual void vtkProteinRibbonFilter::SetSphereResolution ( int  )

virtual

Resolution of the spheres for small molecules. Default is 20.

int vtkProteinRibbonFilter::FillInputPortInformation ( int  , vtkInformation *    )

protected

int vtkProteinRibbonFilter::RequestData ( vtkInformation *  , vtkInformationVector **  , vtkInformationVector *    )

protected

void vtkProteinRibbonFilter::CreateThinStrip ( vtkPolyData *  poly, vtkUnsignedCharArray *  pointsColors, vtkPoints *  p, std::vector< std::pair< vtkVector3f, bool > > &  p1, std::vector< std::pair< vtkVector3f, bool > > &  p2, std::vector< vtkColor3ub > &  colors  )

protected

void vtkProteinRibbonFilter::CreateAtomAsSphere ( vtkPolyData *  poly, vtkUnsignedCharArray *  pointsColors, double *  pos, const vtkColor3ub &  color, float  radius, float  scale  )

protected

static std::vector<vtkVector3f>* vtkProteinRibbonFilter::Subdivide ( std::vector< std::pair< vtkVector3f, bool > > &  p, int  div  )

staticprotected

void vtkProteinRibbonFilter::SetColorByAtom ( std::vector< vtkColor3ub > &  colors, vtkStringArray *  atomTypes  )

protected

void vtkProteinRibbonFilter::SetColorByStructure ( std::vector< vtkColor3ub > &  colors, vtkStringArray *  atomTypes, vtkUnsignedCharArray *  ss, const vtkColor3ub &  helixColor, const vtkColor3ub &  sheetColor  )

protected

Member Data Documentation

std::map<std::string, vtkColor3ub> vtkProteinRibbonFilter::ElementColors

protected

Definition at line 107 of file vtkProteinRibbonFilter.h.

float vtkProteinRibbonFilter::CoilWidth

protected

Definition at line 109 of file vtkProteinRibbonFilter.h.

float vtkProteinRibbonFilter::HelixWidth

protected

Definition at line 110 of file vtkProteinRibbonFilter.h.

int vtkProteinRibbonFilter::SphereResolution

protected

Definition at line 111 of file vtkProteinRibbonFilter.h.

int vtkProteinRibbonFilter::SubdivideFactor

protected

Definition at line 112 of file vtkProteinRibbonFilter.h.

bool vtkProteinRibbonFilter::DrawSmallMoleculesAsSpheres

protected

Definition at line 113 of file vtkProteinRibbonFilter.h.

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The documentation for this class was generated from the following file:

• dox/Domains/Chemistry/vtkProteinRibbonFilter.h